GgaEX0025502 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178292917-178311089:-
Coord C1 exon
chr1:178310939-178311089
Coord A exon
chr1:178299147-178299319
Coord C2 exon
chr1:178292917-178293082
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGTTTAAAATCTGTTTCCAGGCT
3' ss Score
7.64
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AATAAAGTGTATCAGTTCTGCAGCAGAGCATGTTCTGATGATTATAAGAAACTGCACTGCATAGTTACGTACTGTGAATACTGTCAAGAGGAGAAAACACTGCATGAGACTGTGAATTTCTCTGGCATCAAAAGACCATTTTGTAGTGAAG
Seq A exon
GCTGCAAGCTGCTATATAAACAAGACTTTGCAAGACGGTTAGGACTGAGATGTGTTACTTGTAATTACTGCTCACAGCTGTGCAAAAAGGGAGCAACTAAGGAACTTGATGGTGTAGTGAGAGATTTCTGCAGTGAAGAGTGCTGTAAAAAATTTCAGGACTGGTACTACAAG
Seq C2 exon
GCTGCGCGGTGTGACTGTTGTAAGTCACAGGGAACTCTCAGAGAGAAAGTGCAGTGGCGTGGAGAAATGAAACACTTTTGTGATCAGCACTGTTTGCTCCGTTTCTACTGTCAACAAAATGAACCAAATCTGGCAACCCAAAAAGGACCGGAGAACTTGCAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCAGAGCATGTTCTGA
R:
TGTTGACAGTAGAAACGGAGCA
Band lengths:
250-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]