HsaEX6039451 @ hg19
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20608394-20625738:+
Coord C1 exon
chr13:20608394-20608544
Coord A exon
chr13:20610877-20611049
Coord C2 exon
chr13:20625573-20625738
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATAAATCTTATATTTTTCAGGCT
3' ss Score
6.92
5' ss Seq
AAGGCGAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
AACAAAGTGCATCAGTTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
Seq A exon
GCTGCAAATTATTATACAAACAGGATTTTGCCAGACGTTTAGGATTGAGATGTGTTACTTGCAACTATTGTTCTCAGCTATGTAAGAAGGGAGCAACTAAAGAACTCGATGGTGTTGTGAGAGATTTCTGCAGTGAAGATTGCTGTAAAAAATTTCAGGATTGGTACTACAAG
Seq C2 exon
GCTGCAAGGTGTGACTGTTGTAAATCTCAAGGAACTCTTAAAGAGCGAGTTCAGTGGCGTGGGGAAATGAAACATTTCTGTGATCAACATTGCTTACTGCGTTTCTACTGTCAACAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACTTACATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCAGTTCTGCAGCAAAAC
R:
TGACAGTAGAAACGCAGTAAGCA
Band lengths:
257-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)