MmuEX6041796 @ mm10
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56928187-56937675:+
Coord C1 exon
chr14:56928187-56928337
Coord A exon
chr14:56932089-56932261
Coord C2 exon
chr14:56937510-56937675
Length
173 bp
Sequences
Splice sites
3' ss Seq
AAACATACAACATTTTTCAGGCT
3' ss Score
3.58
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AACAAAGTGCATCAGTTCTGCAGCAAAACTTGCTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGCCAAGAGGAGAAGACTCTGCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
Seq A exon
GCTGCAAGCTATTATACAAACAAGATTTTGCAAGACGATTAGGATTAAGATGTGTTACCTGCAACTATTGTTCTCAGCTGTGTAAGAAGGGAGCCACTAAAGAACTTGATGGAGTTGTCAGAGACTTCTGCAGTGAAGACTGCTGTAAGAAATTCCAGGAGTGGTACTACAAG
Seq C2 exon
GCTGCGAGGTGTGACTGCTGTAAATCCCAAGGCACTCTGAAAGAGCGAGTGCAGTGGCGTGGCGAAATGAAACATTTCTGTGATCAGCACTGCTTACTACGTTTCTATTGTCAGCAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACCTACATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'20-19,'20-17,22-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCAGTTCTGCAGCAAAAC
R:
ACGTAGTAAGCAGTGCTGATCAC
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types