BtaEX6057429 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025210 | COL4A2
Description
collagen, type IV, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2203]
Coordinates
chr12:89160505-89161220:+
Coord C1 exon
chr12:89160505-89160666
Coord A exon
chr12:89160788-89160886
Coord C2 exon
chr12:89161074-89161220
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACGCCCTGCTTGTCCTGAAGGGC
3' ss Score
6.04
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTTATCGAGGGCCCCCGGGGCCGCCCGGGCCTGCAGCTCTCCCCGGAAGCAAAGGCGATGAGGGGAGTCCAGGAACCCCCGGAAGCCCCGGGACCAAAGGATGGATCGGCGACCCCGGGCCCCAGGGCCGGCCTGGCGTGTTCGGGCTCCCAGGAGAAAAAG
Seq A exon
GGCCCAAAGGGGAGCCAGGATTCATGGGCAACATAGGCCCCACCGGGAGCCCGGGCGACCGAGGCCCCAAGGGACCCAAAGGAGACCGAGGACTCCCGG
Seq C2 exon
GTGCTCCCGGTGCTGTGGGGACTCCAGGCATCACAGGAATCCCCCAGAGGATTGCGATCGAGCGGGGCCCAGTGGGTCCACAGGGCAGGAGAGGCCCCCCAGGGGCTCAGGGGGAGATGGGGCCACAGGGCCCCCCCGGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025210-'45-49,'45-47,46-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(73.0=83.6),PF0139113=Collagen=PU(23.1=27.3)
A:
PF0139113=Collagen=FE(50.8=100)
C2:
PF0139113=Collagen=PD(24.6=32.0),PF0139113=Collagen=PU(56.9=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGGGAGTCCAGGAACC
R:
GCTCGATCGCAATCCTCTGG
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]