RnoEX6056241 @ rn6
Exon Skipping
Gene
ENSRNOG00000023972 | Col4a2
Description
collagen type IV alpha 2 chain [Source:RGD Symbol;Acc:1308085]
Coordinates
chr16:83391920-83392731:-
Coord C1 exon
chr16:83392570-83392731
Coord A exon
chr16:83392387-83392485
Coord C2 exon
chr16:83391920-83392066
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTGTCTTCATTGCAGGGC
3' ss Score
10.99
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTACCAAGGCCCTCCAGGACCACCGGGGCCAAATGCACTTCCTGGAATCAAAGGAGATGAGGGGAGCTCGGGAGCTGCAGGTTTCCCCGGAGAGAAAGGATGGGTTGGTGACCCAGGGCCCCAGGGCCAGCCTGGTGTTCACGGTCTTCCAGGGGAGAAAG
Seq A exon
GGCCCAAGGGTGAGCAAGGATTCATGGGCAACACTGGGCCCTCTGGGGCCGTGGGTGACAGAGGCCCCAAAGGACCCAAAGGTGACCAAGGATTCCCAG
Seq C2 exon
GTGCTCCTGGCTCTATGGGATCCCCAGGCATCCCGGGCATCCCCCAGAAGATTGCTGTCCAGCCTGGGACCATGGGTCCCCAGGGCAGGAGAGGCCTTCCCGGTGCACTGGGAGAGATGGGGCCTCAGGGCCCTCCTGGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023972-'47-47,'47-46,49-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(19.0=21.8)
A:
PF0139113=Collagen=FE(52.4=100)
C2:
PF0139113=Collagen=PD(27.0=34.0),PF0139113=Collagen=PU(57.4=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAGATGAGGGGAGCTCG
R:
CTGGACAGCAATCTTCTGGGG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]