GgaEX1016743 @ galGal4
Exon Skipping
Gene
ENSGALG00000016843 | COL4A2
Description
collagen, type IV, alpha 2 precursor [Source:RefSeq peptide;Acc:NP_001155862]
Coordinates
chr1:138380991-138382216:+
Coord C1 exon
chr1:138380991-138381152
Coord A exon
chr1:138381284-138381382
Coord C2 exon
chr1:138382070-138382216
Length
99 bp
Sequences
Splice sites
3' ss Seq
CGTGTCTTTTTGCATTAAAGGTC
3' ss Score
8.91
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTATCCAGGACTACATGGGCAGCCTGGAATACCAGCTCCACCGGGAAGCAAGGGAGAAAGTGGACGAGCAGGTGTGAGCGGACAAGCTGGCCCCAAAGGGACAAGAGGTGATCCTGGATTACCAGGGAGACCTGGGATTCCTGGTTATCCTGGACCAAAAG
Seq A exon
GTCGTAAGGGTGAACAAGGTGTCATTGGCTTTATTGGCACAGTAGGATTTCCAGGTGATTTGGGACCCATCGGACCCAAGGGGGATAGAGGGCTTACTG
Seq C2 exon
GCTTTCAGGGCCCTCCAGGCTCTCCTGGGTTGCCACCAATTCCTCCAAGGCTGGTTGCTGAGCAAGGTTCACCAGGTCCCCGTGGAAATGCAGGGCCTCGGGGAAGTCCGGGTGATGCAGGACCTCAAGGTCCACCAGGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016843-'63-71,'63-68,64-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(66.7=100),PF0139113=Collagen=PU(24.6=27.3)
A:
PF0139113=Collagen=PD(11.1=26.5),PF0139113=Collagen=FE(54.1=100)
C2:
PF0139113=Collagen=PD(19.7=24.0),PF0139113=Collagen=PU(57.4=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGTGGACGAGCAGGTG
R:
TGAACCTTGCTCAGCAACCAG
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]