MmuEX6034335 @ mm9
Exon Skipping
Gene
ENSMUSG00000031503 | Col4a2
Description
collagen, type IV, alpha 2 [Source:MGI Symbol;Acc:MGI:88455]
Coordinates
chr8:11443071-11443702:+
Coord C1 exon
chr8:11443071-11443232
Coord A exon
chr8:11443317-11443415
Coord C2 exon
chr8:11443556-11443702
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTGTCTTCATTGCAGGGC
3' ss Score
11.06
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTACCAAGGCCCTCCAGGACCACCTGGGCCAAACGCACTTCCTGGAATCAAAGGAGATGAGGGGAGCTCTGGAGCTGCAGGATTCCCTGGACAGAAAGGATGGGTTGGGGACCCAGGGCCCCAGGGCCAGCCTGGTGTACTCGGTCTTCCGGGGGAGAAAG
Seq A exon
GGCCCAAGGGTGAACAAGGATTCATGGGCAACACCGGGCCCTCTGGGGCCGTGGGTGACAGAGGCCCCAAAGGACCCAAAGGCGACCAAGGATTCCCAG
Seq C2 exon
GTGCTCCTGGCTCTATGGGGTCCCCAGGAATTCCTGGCATCCCCCAGAAGATTGCTGTCCAGCCTGGAACGCTGGGTCCCCAGGGCAGGAGAGGCCTTCCTGGGGCCCTGGGAGAGATAGGGCCGCAGGGCCCTCCTGGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031503-'44-45,'44-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(74.3=94.5),PF0139113=Collagen=PU(19.0=21.8)
A:
PF0139113=Collagen=FE(52.4=100)
C2:
PF0139113=Collagen=PD(27.0=34.0),PF0139113=Collagen=PU(57.4=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGAGGGGAGCTCTGGAG
R:
CTGGACAGCAATCTTCTGGGG
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: