BtaEX6057431 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025210 | COL4A2
Description
collagen, type IV, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2203]
Coordinates
chr12:89157807-89160666:+
Coord C1 exon
chr12:89157807-89157932
Coord A exon
chr12:89159695-89159811
Coord C2 exon
chr12:89160505-89160666
Length
117 bp
Sequences
Splice sites
3' ss Seq
AACTTCCATTTCCCTCCCAGGGG
3' ss Score
8.23
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGCAGACGTCCACGGGGACCCCGGATTCCCAGGCCCTGCCGGGGATAAGGGTGACCCCGGAGAGCCCAACACCCTTCCAGGCCCCACGGGAGCCCCGGGACAGAAGGGCGAGCGTGGAGCCCCAG
Seq A exon
GGGAGCGAGGCCCAATCGGGAGTCCCGGACTTCAGGGCTTTCCAGGCATCACCCCTCTCTCCAACATCTCTGGGTCACCAGGGGACGTTGGCGCGCCCGGGATATTCGGCCTGGAAG
Seq C2 exon
GTTATCGAGGGCCCCCGGGGCCGCCCGGGCCTGCAGCTCTCCCCGGAAGCAAAGGCGATGAGGGGAGTCCAGGAACCCCCGGAAGCCCCGGGACCAAAGGATGGATCGGCGACCCCGGGCCCCAGGGCCGGCCTGGCGTGTTCGGGCTCCCAGGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025210-'42-46,'42-45,43-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.9=9.3),PF0139113=Collagen=PD(39.3=55.8),PF0139113=Collagen=PU(53.4=90.7)
A:
PF0139113=Collagen=PD(45.2=82.5),PF0139113=Collagen=PU(25.4=40.0)
C2:
PF0139113=Collagen=PD(73.0=83.6),PF0139113=Collagen=PU(23.1=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGGGATAAGGGTGA
R:
TTTTTCTCCTGGGAGCCCGAA
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]