RnoEX0023260 @ rn6
Exon Skipping
Gene
ENSRNOG00000023972 | Col4a2
Description
collagen type IV alpha 2 chain [Source:RGD Symbol;Acc:1308085]
Coordinates
chr16:83392570-83394506:-
Coord C1 exon
chr16:83394381-83394506
Coord A exon
chr16:83393707-83393823
Coord C2 exon
chr16:83392570-83392731
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGCTTTCCTCCCAAGGGG
3' ss Score
9
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGTCGATGCCCATGGTGACCCAGGGTTCCCAGGCCCCACTGGAGACAGGGGTGACCGGGGAGAGGCCAACACACTTCCAGGCCCTGTAGGAGCTCCAGGGCAGAAAGGGGAGCAGGGAATCCCAG
Seq A exon
GGGAACGTGGCCCAGTCGGAAGCCCAGGACTTCAGGGTTTTCCTGGTATTTCTCCACCATCCAACATCTCTGGGTTACCTGGTGATGTGGGGGCACCAGGAATATTTGGCTTGCAAG
Seq C2 exon
GCTACCAAGGCCCTCCAGGACCACCGGGGCCAAATGCACTTCCTGGAATCAAAGGAGATGAGGGGAGCTCGGGAGCTGCAGGTTTCCCCGGAGAGAAAGGATGGGTTGGTGACCCAGGGCCCCAGGGCCAGCCTGGTGTTCACGGTCTTCCAGGGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023972-'45-45,'45-44,46-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.8=9.3)
A:
NO
C2:
PF0139113=Collagen=PU(19.0=21.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCCCACTGGAGACA
R:
CTGGAAGACCGTGAACACCAG
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]