MmuEX6034337 @ mm10
Exon Skipping
Gene
ENSMUSG00000031503 | Col4a2
Description
collagen, type IV, alpha 2 [Source:MGI Symbol;Acc:MGI:88455]
Coordinates
chr8:11441222-11443232:+
Coord C1 exon
chr8:11441222-11441347
Coord A exon
chr8:11441880-11441996
Coord C2 exon
chr8:11443071-11443232
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACTTCCGTTTTCTTCCTAAGGGG
3' ss Score
8.95
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGTTGATGCTCATGGAGACCCAGGGTTCCCAGGCCCCACTGGAGACAGGGGTGACCGGGGAGAGGCCAACACACTTCCAGGCCCCGTGGGAGTTCCAGGGCAGAAAGGGGAGCGGGGAACCCCAG
Seq A exon
GGGAACGTGGCCCAGCTGGAAGCCCAGGACTTCAGGGTTTCCCTGGTATCTCTCCACCATCCAACATCTCTGGGTCACCTGGTGATGTAGGCGCACCAGGAATATTTGGCTTGCAAG
Seq C2 exon
GCTACCAAGGCCCTCCAGGACCACCTGGGCCAAACGCACTTCCTGGAATCAAAGGAGATGAGGGGAGCTCTGGAGCTGCAGGATTCCCTGGACAGAAAGGATGGGTTGGGGACCCAGGGCCCCAGGGCCAGCCTGGTGTACTCGGTCTTCCGGGGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031503-'53-78,'53-70,56-78=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(4.7=7.0),PF0139113=Collagen=FE(42.4=100)
A:
PF0139113=Collagen=PD(34.3=85.0),PF0139113=Collagen=PU(22.4=42.5)
C2:
PF0139113=Collagen=PD(74.3=94.5),PF0139113=Collagen=PU(19.0=21.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCCCACTGGAGACA
R:
GAAGACCGAGTACACCAGGCT
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types