GgaEX6005457 @ galGal4
Exon Skipping
Gene
ENSGALG00000016843 | COL4A2
Description
collagen, type IV, alpha 2 precursor [Source:RefSeq peptide;Acc:NP_001155862]
Coordinates
chr1:138377774-138381152:+
Coord C1 exon
chr1:138377774-138377899
Coord A exon
chr1:138379388-138379504
Coord C2 exon
chr1:138380991-138381152
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTCTCTTCTTTTCAGGAG
3' ss Score
11.62
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCCAGACGGCTATGGCTCTGCGGGCTTCCCAGGCCCTGTGGGTGACAAAGGAGAAGCAGGAGAGCCCAGCAGAGTGGAGGGCAGCCAAGGCCCGCCGGGTCAGAAGGGAGACAGAGGTGTTCCAG
Seq A exon
GAGTCCAAGGACCCTTTGGCATTCCTGGGCAGGATGGACTTCCAGGGCCTCCTGGGATTTCCAATATATCAGGATATCCAGGCGATACAGGTTCCCCAGGTCTAGATGGAGTGCCAG
Seq C2 exon
GCTATCCAGGACTACATGGGCAGCCTGGAATACCAGCTCCACCGGGAAGCAAGGGAGAAAGTGGACGAGCAGGTGTGAGCGGACAAGCTGGCCCCAAAGGGACAAGAGGTGATCCTGGATTACCAGGGAGACCTGGGATTCCTGGTTATCCTGGACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016843-'59-66,'59-63,61-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.2=9.3),PF0139113=Collagen=PD(42.4=58.1),PF0139113=Collagen=PU(32.8=44.2)
A:
PF0139113=Collagen=PU(21.0=42.5)
C2:
PF0139113=Collagen=FE(66.7=100),PF0139113=Collagen=PU(24.6=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGACGGCTATGGCTCTG
R:
CCAGGATCACCTCTTGTCCCT
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]