BtaEX6005974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61060657-61065585:-
Coord C1 exon
chrX:61065460-61065585
Coord A exon
chrX:61061086-61061202
Coord C2 exon
chrX:61060657-61060818
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTTATTCTTTGCAGGTT
3' ss Score
11.02
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GACCTAGTATAACCGGTGTGCCTGGGCCAGCTGGCTTGCCTGGTCCCAAAGGGGAAAAAGGTTCTCCAGGAATTGGCATCGGAGCCCCAGGAAAGCCAGGTATAAGAGGACCCAAAGGTAGTCAAG
Seq A exon
GTTTTCCAGGTCTCCAGGGCGCCGCTGGTCTCCCCGGTGCACTGGGCCTCTCCTTGCCTTCAGTCATAGAAGGACAGCCTGGTGACCCTGGGCGACCAGGTCTAGATGGAGAACGAG
Seq C2 exon
GCCGCCCAGGCCCTCCTGGGCCCCCAGGCCCCCCTGGGCCTGCCTCAGATCAAGGCGACCCTGGAGACCCTGGCTTCCCTGGAATTCCTGGCCCTCAAGGGCCCAAAGGAGACCAAGGAATTCCAGGTTTCTCTGGCCTCCCTGGAGAGCTAGGATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(65.0=90.7)
A:
PF0139113=Collagen=PD(33.3=50.0),PF0139113=Collagen=PU(27.0=42.5)
C2:
PF0139113=Collagen=PD(71.4=81.8),PF0139113=Collagen=PU(23.8=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATAACCGGTGTGCCTGGG
R:
ATTCCTTGGTCTCCTTTGGGC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]