MmuEX0012307 @ mm9
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:137609411-137613735:-
Coord C1 exon
chrX:137613610-137613735
Coord A exon
chrX:137609877-137609993
Coord C2 exon
chrX:137609411-137609572
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTTATTCTTTGCAGGTT
3' ss Score
10.34
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GAGCCAGTATCACTGGTGTTCCTGGGCCGGCTGGCCTGCCTGGTCCCAAAGGGGAAAGGGGAGTGCCAGGAATTGTCATCGGAGATCCAGGGAAACAAGGTTCAAAGGGACAAAAAGGTGACCAAG
Seq A exon
GTTCCCCAGGTCTTCAAGGTCCTGCTGGTACCCCTGGAGCCCCAGGCATCTCCTTGCCCTCAGTCATAGCAGGACAGCCTGGTGACCCTGGGCGGCCAGGCCTAGATGGAGAACGAG
Seq C2 exon
GCCGCCCAGGCCCTCCAGGTCCTCCAGGTCCCCCTGGGCCATCCTCAGATCAAGGCGATCCTGGAGACTCTGGCTTCCCTGGGATTCCAGGCCTTCAAGGGTTCAAGGGAAACCAAGGACTTCCAGGTTTCTCTGGCCTCTCTGGAGAGCTAGGGCTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.3=4.7),PF0139113=Collagen=PU(65.0=90.7)
A:
PF0139113=Collagen=PD(33.3=50.0),PF0139113=Collagen=PU(25.8=40.0)
C2:
PF0139113=Collagen=PD(72.6=81.8),PF0139113=Collagen=PU(24.6=27.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCACTGGTGTTCCTGGGC
R:
CCTGGAAGTCCTTGGTTTCCC
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: