DreEX0023339 @ danRer10
Exon Skipping
Gene
ENSDARG00000052061 | col4a6
Description
collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
Coordinates
chr7:50652135-50660924:-
Coord C1 exon
chr7:50660802-50660924
Coord A exon
chr7:50653042-50653158
Coord C2 exon
chr7:50652135-50652233
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTAATTTGCATATAGGTG
3' ss Score
7.8
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GGGATCGTGGTGAACCTGGTCCTCCAGGACCATCAACTCCACCAATTCCAGTGGAACGGCTTGTAAAGGGTGAACCAGGTGAACCAGGAATTGTTGGAGGGCCTGGTTTCACAGGACAAAGAG
Seq A exon
GTGCTCGTGGTTTAAGAGGCTACCCTGGAAATCCAGGCCCCCCTGGTCAACCTAGTCTTTCTAATATCCCAGGTCCTCTCGGAGACCCTGGACTTCCAGGATTAGATGGACGAGAAG
Seq C2 exon
GACAAAGAGGTGAGCCTGGCTTCAGTGGTGTGCCTGGACGACCAGGGTCTCCTGGAGAACCGGGGGATTATGGCAGAAGTGGACCCAGAGGTCTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052061_MULTIEX1-3/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(25.8=38.1),PF0139113=Collagen=PU(33.3=47.6)
A:
PF0139113=Collagen=PD(39.7=62.5),PF0139113=Collagen=PU(24.6=42.5)
C2:
PF0139113=Collagen=FE(49.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGTGGTGAACCTGGTCCT
R:
TCTGGGTCCACTTCTGCCATA
Band lengths:
210-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]