RnoEX6026611 @ rn6
Exon Skipping
Gene
ENSRNOG00000056772 | Col4a6
Description
collagen type IV alpha 6 chain [Source:RGD Symbol;Acc:1589724]
Coordinates
chrX:112413762-112418089:-
Coord C1 exon
chrX:112417964-112418089
Coord A exon
chrX:112414228-112414344
Coord C2 exon
chrX:112413762-112413923
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTTATTCGTTACAGGTT
3' ss Score
9.08
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GAGCCAGTATCACTGGTGTTCCTGGGCCAGCTGGCCTGCCTGGTCCCAAAGGGGAAAAGGGAATGCCAGGAATTGTCATCGGAGATCCAGGGAAACAAGGCTTAAGGGGACAAAAAGGTGACCAAG
Seq A exon
GTTCCCCGGGTCTTCAAGGTCCTGCTGGTACTCCTGGAGCCTCAGGCATCTCCTTGCCCTCAGTCATAGCAGGACAGCCTGGTGACCCTGGGCAGCCAGGCCTAGATGGAGAACGAG
Seq C2 exon
GCCGCCCAGGTCTCCCAGGCCCTCCAGGTCCCCCTGGACCATCCTCAGATCAAGGCGATCCTGGAGACTCTGGCTTCCCTGGAATTCCAGGCCTTCAAGGGCTCAAGGGAAACCAGGGACTTCCGGGTTTCTCTGGGCTCTCTGGAGATCTAGGGCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056772-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(65.0=90.7)
A:
PF0139113=Collagen=PD(33.3=50.0),PF0139113=Collagen=PU(27.0=42.5)
C2:
PF0139113=Collagen=PD(71.4=81.8),PF0139113=Collagen=PU(25.0=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCACTGGTGTTCCTGGGC
R:
AGAGAAACCCGGAAGTCCCTG
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]