HsaEX6041096 @ hg19
Exon Skipping
Gene
ENSG00000134871 | COL4A2
Description
collagen, type IV, alpha 2 [Source:HGNC Symbol;Acc:2203]
Coordinates
chr13:111147689-111155629:+
Coord C1 exon
chr13:111147689-111147814
Coord A exon
chr13:111154015-111154131
Coord C2 exon
chr13:111155468-111155629
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTTTTCATCCTAAGGGG
3' ss Score
8.89
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTCTGACATCCACGGAGACCCAGGCTTCCCAGGCCCTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTTCCAGGCCCTGTGGGAGTCCCAGGACAGAAAGGAGACCAAGGAGCTCCAG
Seq A exon
GGGAACGAGGCCCACCTGGGAGCCCAGGACTTCAGGGGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCACCTGGTGACAAAGGGGCGCCAGGGATATTTGGCCTGAAAG
Seq C2 exon
GTTATCGGGGCCCACCAGGGCCACCAGGTTCTGCTGCTCTTCCTGGAAGCAAAGGTGACACAGGGAACCCAGGAGCTCCAGGAACCCCAGGGACCAAAGGATGGGCCGGGGACTCCGGGCCCCAGGGCAGGCCTGGTGTGTTTGGTCTCCCAGGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134871-'50-51,'50-50,51-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(42.9=90.7)
A:
PF0139113=Collagen=FE(42.9=100),PF0139113=Collagen=PU(23.8=37.5)
C2:
PF0139113=Collagen=PD(13.2=21.8),PF0139113=Collagen=PD(74.6=85.5),PF0139113=Collagen=PU(23.1=27.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCAGGCTTCCCAGG
R:
GACCAAACACACCAGGCCTG
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)