BtaEX6058166 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24578867-24579861:-
Coord C1 exon
chr15:24579719-24579861
Coord A exon
chr15:24579292-24579447
Coord C2 exon
chr15:24578867-24578875
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTGGTGGCTGGATCCCTCAGGGG
3' ss Score
4.82
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCCGCAGCTCCGACGTGCTCCAGGACTCCGTGGTCCCTCTGCTCAGCACCCAGCTCTGCAACAGCTCTTGCGTGTACAGCGGGGCTCTGACGCCCCGCATGCTGTGTGCCGGCTATCTCGACGGGAGGGCGGATGCGTGCCAG
Seq A exon
GGGGACAGCGGGGGTCCCCTGGTGTGCCTGGACGAGGGCACGTGGCGCCTGGTGGGGGTGGTCAGCTGGGGACACGGCTGCGCAGAACCCAGCCACCCCGGAGTCTACGCCAAGGTTGCCGAGTTCCTGGACTGGATTCAGGACACGGCAGCGCAG
Seq C2 exon
CAACTAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650-'11-14,'11-13,12-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
PF0008921=Trypsin=PD(19.5=86.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]