RnoEX6035656 @ rn6
Exon Skipping
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53426407-53429420:+
Coord C1 exon
chr8:53426407-53426549
Coord A exon
chr8:53426843-53426995
Coord C2 exon
chr8:53428484-53429420
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCCTGGATTCCTCAGGGA
3' ss Score
8.92
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTCATAGCTCAGATACACTGCAGGACACAATGGTACCCCTGCTTAGCACCGATCTCTGCAACAGCTCATGCATGTACAGTGGGGCACTCACACACCGCATGCTGTGTGCCGGCTACCTGGATGGAAGGGCAGATGCGTGCCAG
Seq A exon
GGAGACAGTGGGGGACCCCTGGTGTGTCCCAGTGGTGACACGTGGCACCTTGTAGGGGTGGTCAGCTGGGGTCGTGGCTGTGCAGAGCCCAATCGCCCAGGTGTCTATGCCAAAGTAGCAGAGTTCCTGGACTGGATCCATGACACTGTGCAG
Seq C2 exon
GTCCGCTAGCTGAAGAAGAAGCAGCTGCTGCCTGCGACACAGAACTGTGGATCTCCCATGGATCATCCCAGACTGAGGACTAGCATCTGGGTCACTGGGCCTTTCCCCAAAGGCTCTGACTTCTAGTTTGTCTTTCTCATCTGAGAACCTCCACAACAGAGAAGAGTCTGGGGCTGGGTTGGGAATGATGATGAGAGGAAGGGATAAGAAGACAGAGGAGACAGAAGAGGCTTCTGGAAGCATCTGGGAGACTGCCCTCTGCTCTCCACACACCCCATGTGCATCCACTGGGAGGATGCTGGAGGTGCCCCAGCCCTGTTTTCTTCTGAGGCCAGGGAAGGCCTAAGTTCAACTTTAGAAGATGCCCTGTCTCAAGGGTCTTAGGCAGATAATGTTAAGGTTGGACCAGCTCAGGTAAAGGCATCGAAATCAAGATCCCCCCCATGCTGGTCCTGTTTTGAGGTAACTCTAAGTAGCCCTCCGTGAAGCAGAGGTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058-'16-20,'16-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
PF0008921=Trypsin=PD(19.5=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTACAGTGGGGCACTCAC
R:
CAGCCCCAGACTCTTCTCTGT
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]