DreEX6075829 @ danRer10
Exon Skipping
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18228032-18228927:-
Coord C1 exon
chr15:18228785-18228927
Coord A exon
chr15:18228541-18228693
Coord C2 exon
chr15:18228032-18228461
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACAAGTCTTCTTTTCATTAGGGG
3' ss Score
5.52
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTCTTATACCAGAAGTTCTCAAAGAGGCACCCGTACCTTTAATAAGCACAAAGAAATGCAATAGCTCTTGCATGTACAATGGAGAGATCACCTCTCGAATGCTCTGCGCAGGATACTCTGAAGGAAAAGTAGACGCATGTCAG
Seq A exon
GGGGACAGTGGTGGTCCTCTGGTTTGCCAGGATGAAAATGTCTGGAGGCTGGTTGGAGTTGTAAGCTGGGGAACAGGCTGTGCTGAGCCAAACCATCCAGGAGTTTATAGCAAAGTGGCTGAGTTTTTAGGGTGGATATATGACATTATAGAG
Seq C2 exon
AGCTACTAAAGGCTGACGTTTGAAAGTAGAAGAGAAGAACGTCCTGACCCTTTTTTTTAAATAATGTTGCCTTTTATATTATTTATTATATTTTATTACGCAAAGCCTCAGTATTTACAACAATGTAAAGATTGTTTGTTATTATTTGTTTGGTGTTGTGTTACTCAAGATAATTGTGGTTTTACAATAAATGTTTGACATTTACAAAAGGGGACAATGTGATCTGTTCTGTTCTCTTTTTGAATTGCTTAATCTTAAAAGCTTATGTTAGTTCAGGTGAAAATGGTAAAGTATTTATGTGTTTATCTGTGTAACAGTTGTTACAATATTTATATTTGACCATTTCTGGAAAGACTAATCAAGTGCATGGCATTAACACGAATCTATGATGTTTCACGATCGATTTAATCCTTCAACTACCCCACCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
PF0008921=Trypsin=PD(19.3=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGAGGCACCCGTACCTT
R:
TGTAAATACTGAGGCTTTGCGT
Band lengths:
244-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]