MmuEX6065712 @ mm10
Exon Skipping
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49115033-49117587:+
Coord C1 exon
chr9:49115033-49115175
Coord A exon
chr9:49115465-49115617
Coord C2 exon
chr9:49116983-49117587
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTCATACCTGGATTCCTCAGGGA
3' ss Score
6.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTCATAGCTCAGATACACTGCAGGACACAATGGTACCCCTGCTCAGCACCTACCTCTGCAACAGCTCATGCATGTACAGTGGGGCACTTACACACCGCATGTTGTGTGCTGGCTACCTGGATGGAAGGGCAGACGCATGCCAG
Seq A exon
GGAGACAGCGGGGGACCCCTGGTATGTCCCAGTGGTGACACGTGGCACCTTGTAGGGGTGGTCAGCTGGGGTCGTGGCTGTGCAGAGCCCAATCGCCCAGGTGTCTATGCCAAGGTAGCAGAGTTCCTGGACTGGATCCATGACACTGTGCAG
Seq C2 exon
GTCCGCTAGCCGAAGAAGAAGCAGCAGCCACCTGTGACGCCGAGCTGTGGATCGCCCATGGATCACCCCAGTCTGGGGGCCAGCATCTGGGTCACTGGGCCTCTCCCCAAAGGCTCTGACTTCGAGTTCATCTTTCTCATCTGAGAACCTCCACAACAGGAAAAGGAGTCTGCGGCTAGATTGGGAATGATGGTGAGAGGAAGGGATAGGAGGACAGAAGAGACAGCAGAGGCTTCTGGAAGCATCTGGGAGACTGCTCCTCTGCTCCCCCCACACCCCACGTGCATCCACTGGGGGATGCTGGAGATGCCCAATCCTTGTTTCTTGTGGGGCCACTGGAAGGCTAAGTCCAACTTTAGAGGATGCCCTGTCTCGAGAGTTACTAGGCAGATAAGGTTAAGGTTGGACAAGCTCAGGTAAAGGCACGGAAGTCGAGATCCCCTCTCCCCTGTGCGGTCCTGTTCTGAGGTAAGCTAATAGCCCCGCACCAGGCAGAGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-'12-25,'12-23,16-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
PF0008921=Trypsin=PD(19.5=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGACACAATGGTACCC
R:
AGTCAGAGCCTTTGGGGAGAG
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types