BtaEX6058749 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32290093-32309082:+
Coord C1 exon
chr15:32290093-32290666
Coord A exon
chr15:32298683-32299284
Coord C2 exon
chr15:32308521-32309082
Length
602 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTGCCCACCCTCAGCTC
3' ss Score
6.92
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CACGACGGTGGAGTCCAGGGGTGTGCTGACCGTGCAGTACTCAGACGTGGGTCTGCTCTACATCCGACTCTCCACGGCCTACTTTAACTGCACTGGGGGGTTGTGTGGCTTCTTCAATGCCAACGCCAGCGACGAGTTCTGTCTCCCCACTGGCAAGTGCACGGACAACCTGGCAGTGTTCCTGGAGAGCTGGACCACTTTCGAGGAGATCTGCAATGGGGAGTGCGGGGACCTGCTGAAGGCCTGCAACAACGACTCGGAGCTGCTGAAGTTCTACCGCAGCCGTTCCAGGTGCGGCATCATCAACGACCCCTCCAACAGCTCCTTCCTGGAGTGTCACAGTGTGGTCAACGTCACCGCTTACTACCGCACCTGCCTCTTCCGCCTGTGTCAGAGCGGGGGCAATGAGTCGGAGCTGTGTGACTCCGTGGCCCGGTACGCAAGTGCCTGCAAGAACGCCGATGTGGAGGTGGGCCCCTGGAGAACCCACGACTTCTGCC
Seq A exon
CTCTGGAGTGCCCGGAGAACAGCCATTTCGAGGAGTGCATGACGTGTACGGAGACCTGTGAGACCCTGGCCCTGGGCCCCATCTGTGTGGACACCTGCTCCGAGGGGTGTCAGTGTGACGAGGGCTATGCCCTGCAAGGCAGCCAGTGCGTCACCCGGAGCGAGTGTGGCTGCAACTTCGAAGGGCACCAGCTTGCCACCAATGAGACCTTCTGGGTGGACCTGGACTGCCAGATCTTCTGCTACTGCAATGGCACGGACAACAGCGTCCACTGTGAGACCATCCCCTGCAAGGACGACGAGTACTGCATGGAGGAAGGCGGCCTCTACTACTGCCAGGCCCGCACTGACGCCTCCTGCGTCGTCTCGGGCTACGGCCACTACCTGACCTTTGACGGCTACCCCTTTGACTTCCAAACCAGCTGCCCGCTCATCCTGTGCACCACAGGAAGCAGGCCGAACTCAGACACGTTCCCCAAGTTCGTCGTCACAGCCAAGAACGAGGATCGAGATCCGTCGCTGGCGCTGTGGGTCAAGCAGGTGGAGGTGACCGTGTGGGGCTACAGCATCGTGATTCACAGGGCCTACAAGCACACGGTGCTG
Seq C2 exon
GTCAACAATGAACGGCTCTATCTGCCCCTGAAGTTGGGACAAGGGAAGATAAACATCTTTTCTTTTGGTTTCCACGTGGTGGTGGAAACTGACTTTGGGCTAAAGGTGGTCTACGACTGGAAGACCTTCCTGTCCGTCACGGTCCCTCGGAGCATGCAGAACAGCACCTACGGCCTGTGTGGCCGCTACAACGGCAACCCCGACGACGACCTGGAGATGCCCATAGGTCTGCTGGCCTCCAGCGTCAATGAGTTTGGACAGAGCTGGGTGAAGAGGGACACCTTCTGCCAGATTGGCTGTGGTGACCGCTGCCCATCCTGTGCCAAGGTGGAAGGTTTCTCCAAAGTGCAGCAGCTCTGCAGCCTCATCCCCAACCAGAATGCGGGCTTCACCAAGTGCCACAGCAAGGTCAACCCCACTTTCTTCTATAAGAACTGCCTCTTCGACTCTTGCATCGATGGGGGCGCTGTGCAGACCGCCTGCAGCTGGCTGCAGAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.4),PF127142=TILa=WD(100=28.4),PF0009420=VWD=PU(50.9=40.3)
C2:
PF0009420=VWD=PD(47.8=40.4),PF087426=C8=WD(100=40.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGGAGCTGCTGAAGTTC
R:
GCCCAAAGTCAGTTTCCACCA
Band lengths:
347-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]