HsaEX6005264 @ hg19
Exon Skipping
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:121000347-121016825:+
Coord C1 exon
chr11:121000347-121000920
Coord A exon
chr11:121008130-121008731
Coord C2 exon
chr11:121016264-121016825
Length
602 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTGACCACCTGCAGCAC
3' ss Score
6.3
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TACGACAGTGGAGTCCAAGGGCGTGGTGACTGTCCAGTACTCAGACATAGGTCTATTGTACATCCGGCTGTCCACCACATACTTCAATTGCACAGGGGGCTTGTGCGGCTTCTACAATGCCAACGCCAGTGACGAGTTCTGTCTCCCCAACGGCAAGTGCACGGACAACCTGGCAGTGTTCCTGGAAAGCTGGACAACTTTCGAGGAGATCTGCAATGGAGAGTGTGGGGACCTGCTGAAGGCCTGCAACAATGACTCGGAGCTGCTCAAGTTTTATCGAAGCCGCTCCAGGTGCGGCATCATCAACGACCCCTCCAACAGCTCCTTCCTGGAGTGCCATGGGGTGGTGAACGTCACTGCCTATTACCGCACCTGCCTTTTCCGCCTGTGCCAGAGTGGGGGCAATGAGTCAGAGCTCTGTGACTCTGTGGCCCGGTATGCAAGCGCCTGCAAGAATGCGGACGTGGAGGTGGGGCCCTGGCGGACCTATGACTTCTGCC
Seq A exon
CACTGGAGTGCCCAGAGAACAGCCACTTTGAGGAGTGCATCACATGTACAGAGACCTGTGAGACCCTTACCCTGGGCCCCATCTGCGTGGATAGCTGCTCTGAGGGATGTCAGTGTGATGAGGGCTATGCTCTACTGGGCAGCCAGTGTGTCACGCGGAGTGAGTGTGGCTGCAACTTTGAGGGGCACCAACTTGCCACCAATGAGACCTTCTGGGTGGACCTGGACTGCCAGATCTTCTGCTATTGCAGTGGCACAGACAACAGGGTCCACTGCGAGACCATTCCCTGCAAGGATGATGAGTACTGCATGGAGGAAGGTGGCCTGTACTACTGCCAAGCCCGCACCGACGCCTCCTGCATCGTCTCAGGCTACGGCCACTACCTCACCTTTGATGGCTTCCCCTTTGACTTCCAGACCAGCTGCCCACTCATCCTGTGCACCACAGGAAGCAGGCCAAGCTCAGACTCTTTCCCCAAGTTTGTTGTCACAGCCAAGAATGAGGACCGGGACCCGTCACTGGCCTTGTGGGTTAAGCAGGTGGACGTGACCGTGTTTGGCTACAGCATCGTGATCCACCGAGCTTACAAGCACACTGTGCTG
Seq C2 exon
GTCAACAGTGAACGGCTCTATCTGCCCCTGAAGCTGGGGCAAGGGAAGATAAATATCTTTTCCTTTGGCTTCCACGTGGTGGTGGAAACTGATTTTGGCCTGAAGGTTGTATATGACTGGAAGACCTTCCTGTCCATCACAGTCCCTCGGAGCATGCAGAACAGCACCTATGGTCTGTGTGGCCGCTACAACGGCAACCCTGATGATGACCTGGAGATGCCCATGGGTCTGCTTGCATCGAGTGTCAATGAGTTTGGGCAGAGCTGGGTGAAGAGGGACACCTTCTGCCAGGTGGGCTGTGGGGACCGCTGTCCGTCCTGTGCCAAGGTGGAAGGTTTCTCCAAAGTGCAGCAGCTGTGCAGCCTGATCCCCAACCAGAACGCTGCCTTCTCCAAGTGTCACAGCAAAGTTAACCCCACCTTCTTCTATAAGAACTGCCTGTTTGACTCTTGCATCGATGGGGGCGCGGTGCAGACCGCCTGCAGCTGGCTGCAGAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-'10-13,'10-11,11-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.4),PF127142=TILa=WD(100=28.4),PF0009420=VWD=PU(50.9=40.3)
C2:
PF0009420=VWD=PD(47.8=40.4),PF087426=C8=WD(100=40.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCCTATTACCGCACC
R:
GTCATCATCAGGGTTGCCGTT
Band lengths:
358-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)