MmuEX6065183 @ mm10
Exon Skipping
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42358906-42373420:-
Coord C1 exon
chr9:42372847-42373420
Coord A exon
chr9:42366668-42367269
Coord C2 exon
chr9:42358906-42359467
Length
602 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTGACCACCCTCAGCTC
3' ss Score
5.51
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CACAACTGTGGAGTCCAAGGGTGTGGTGTCCGTCCAGTACTCCGATGTGGGACTACTGTACATCCGACTGTCCACCATGTACTTCAACTGTACTGGAGGCCTGTGTGGCTTCTTCAATGCCAATGCCAGTGATGAGTTCTGCCTTCCTAATGGCAAATGCACAGACAACCTGGCGGTGTTCTTGGAGAGCTGGACAACATTTGAGGAAATCTGCAATGGCGAGTGTGGGGACCTGCTGAAGGCCTGCAACAATGACTCCGAGCTGCTCAAGTTCTACCGGAGCCGCTCCCGGTGTGGTATCATCAACGACCCCTCCAACAGCTCCTTCCTGGAGTGCCATGGGGTGGTTAATGTCACCGCCTACTACCGCACCTGCCTGTTTCGCCTGTGCCAGAGCGGAGGCAATGAGTCAGAGCTGTGTGATTCTGTGGCCCGCTATGCCAGTGCTTGCAAGAATGCAGATGTGGAGGTGGGCCCCTGGAGGACCTATGACTTCTGCC
Seq A exon
CTCTAGAATGCCCGGAGAACAGCCATTTTGAGGAGTGTATGACATGTACAGAGACCTGCGAGACCCTGGCCTTGGGCCCCATCTGTGTGGACAGCTGCTCTGAGGGATGCCAGTGTGATGAAGGTTATGCCCTGCAGGGCAGCCAGTGTGTCCCTCGGAGCGAGTGCGGCTGCAACTTTGAGGGGCATCAACTTGCCACCAATGAGACCTTCTGGGTAGACCAGGACTGCCAGATCTTCTGCTACTGCAATGGCACAGACAACAGTGTCCACTGTGAGACCATTCCCTGCAGGGACGATGAATACTGTATGGAAGAGAGTGGCTTGTACTACTGCCAGCCCCGTACTGATGCTTCCTGTATCGTCTCAGGCTATGGTCACTACCTCACCTTTGATGGCTACCCATTTGACTTCCAGACCAGTTGTCCTCTTATCCTCTGCACCACAGGAAGCAGACCAATCTCAGACTCTTTCCCCAAGTTCATTGTAACAGCCAAGAATGAGGACCGGGACCCATCTCTAGCCTTGTGGGTGAAGCAGGTGGACGTGAACGTGTTTGGCTACAGCATTGTGATACACCGGGCTTACAAGCACACTGTGTTG
Seq C2 exon
GTCAACAATGAGCGGTTGTACCTGCCCCTGAAGTTAGGACAAGGGAAGATAAACATCTTTTCATTCGGCTTTCATGTGGTTGTGGAGACTGACTTTGGCCTGAAGGTCGTGTATGACTGGAAGACCTTCCTGTCCATTACCGTCCCCCGGAGCATGCAGAACGGCACCTATGGCCTCTGTGGACGCTACAATGGCAACCCCGATGATGACCTTGAGATGCCCATGGGGCTGCCTGCACTGAGTATCAACGAGTTTGGCCAGAGCTGGGTGAAGAGAGACACCTTCTGCCAGGTGGGCTGTGGGGACCGCTGCCCATCCTGTGCCAAAGTGGAAGGTTTCTCCAAAGTACAGCAGCTGTGCAGCCTGATCCCCAACCAGAATGCTGGCTTTGCCAAATGTCACAGCAAAGTCAACCCCACCTTCTTCTACAAAAACTGCCTGTTTGACTCCTGTATCGATGGGGGTGCCGTGCAGACAGCCTGCAGCTGGTTACAAAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-'9-12,'9-11,10-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.4),PF127142=TILa=WD(100=28.4),PF0009420=VWD=PU(50.9=40.3)
C2:
PF0009420=VWD=PD(47.8=40.4),PF087426=C8=WD(100=40.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCGAGCTGCTCAAGTTC
R:
TCAGGCCAAAGTCAGTCTCCA
Band lengths:
350-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types