DreEX6014070 @ danRer10
Exon Skipping
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62525424-62531842:-
Coord C1 exon
chr5:62531272-62531842
Coord A exon
chr5:62528983-62529632
Coord C2 exon
chr5:62525424-62525528
Length
650 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTCTTTCTTTAGCTC
3' ss Score
10.18
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
TAATACCACGGTGATTGAGTGGAGTGGCTTGGTCCGCACTCGATACTCACGTCAAGGCCTACTAAACATCACTCTCTCCACTCTCTTTTACAACACCACCTGTGGTCTGTGTGGCTTTTTCAACGGAGATCCAATCGATGACCTCCGGCTACCAAGTGGAAGGCAGGCCGATTCAGCCGACCAGTTTATTGAAAGCTGGAGAGCTATTGCAGACGATCTGACATGCAATGGCGATTGTGAGGACTTGTATCGCATGTGTACAGATTTACGGCAATACCAGAGCCCATGGCTGTGTGGGAACATCAACGACCCAGGAAACAGCTCATTCCTAGCTTGCCATACAGCGGTTAATCCGTCTCCTTTCTTCAGGAACTGCCTCTACAACATGTGTGTAAGGGAGGGAAACCGTTCTGCCCTGTGTAACTCCCTGCAGGCTTATGCATCCGCTTGTCAGGATGCTCAGATCAACCTGGGAACATGGAGAAGTGCTACCAACTGCC
Seq A exon
CTCTACCCTGCCCAGAAAACAGTCACTTCGATGAGTGTACATCTGCATGCCCTCTCACCTGTTCTAATCTGGATGAACCAGAAGAGCCGTGCCCTCTACCCTGCTCTGAGGGCTGTCAGTGTGAGGAGGGTTTTGCCCTTCGCGACGGCATCTGCGTAGCACGCAGTGACTGTGGCTGCTTTTACCTGGGTCGCCAACTGGCCACCAATGAGACATTCTGGACTGACTGGGAATGCCAGGAGCGCTGTTTCTGTAACGGCACCGACAACAGCGTCTACTGCACCTTCTCACCCTGTCACCCAGAGGAGTACTGCCAAGAGAACGAAGGCCTCTTTTTCTGTCAGCCCAGGACTGAGGCCATGTGTGCTGTTGCTGGATATGCACACTTTTTGCCATTTGGAGGTGTGCCGTTTGACCTTCAGAGCAGCTGTACTCTTCGTCTTGCCACTACTGACTGCGGAGAAGGAGATGAGGATAGCTTTGGAGGACTAGACAGTGCTGAGACAGTTCTGGGAGGACTGCCCAACTTCCAGTTATCAGTACGGAATGAAGAAAGAGACACTGGCCAGGCGATATGGGTGCGAGGATTTGTTCTGGAGGTCTACGGATATGAAATTGAGGTGTCACGAAGCTTTAAACATACAGTCACG
Seq C2 exon
GTGAATAAGGAGCGCCTGTATCTGCCTTTAAAACTGGGTCCAGGAAAAGTTAACATCTACACCCTTGGTCTGCAGTTACTTGTGGAGACCGACTTTGGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.7=40.3),PF087426=C8=WD(100=40.3)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=25.3),PF127142=TILa=WD(100=26.3),PF0009420=VWD=PU(60.5=43.8)
C2:
PF0009420=VWD=PU(55.7=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGCGATTGTGAGGACT
R:
ACTGCAGACCAAGGGTGTAGA
Band lengths:
352-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]