BtaEX6058770 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32721640-32723427:+
Coord C1 exon
chr15:32721640-32721771
Coord A exon
chr15:32722969-32723095
Coord C2 exon
chr15:32723258-32723427
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCCCCTTTTCTCTCTCTAGAGG
3' ss Score
11.65
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCACGCACAGCACGCTGACCTGCACGGCCCTGGAGTTCCAGTGCCAGGACGGTGAGGCCTGCATCATGCTCTCTGAGCGCTGCGACGGCTTCCTGGACTGCTCGGACGAGAGTGATGAGCATGCCTGCAGTG
Seq A exon
AGGAATTAAATGTATACAAAATACAGAATCTTCAGTGGACAGCAGACTTCTCTGGGGATGTAACTTTGACCTGGATACGGCCCAAGAAGATGCCCTCTGCTTCTTGTGTGTATAACGTCTACTACAG
Seq C2 exon
GGTGGTTGGAGAGAGCATATGGAATACCCTGGAGACCCACAGCAATAAAACGAGCACAGTATTGAAAGTCTTGAAGCCAGACACCACATATCAGGTCAAAGTCCAGGTCCAGTGTCTGAGCAAGGTGCACAGTACCAACGACCTCGTGACCCTGAGGACTCCCGAAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'61-47,'61-46,63-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=84.4)
A:
PF0004116=fn3=PU(47.4=86.0)
C2:
PF0004116=fn3=PD(51.3=69.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATCATGCTCTCTGAG
R:
CTTCGGGAGTCCTCAGGGTC
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]