GgaEX0028161 @ galGal3
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
NA
Coordinates
chr24:3536615-3541625:-
Coord C1 exon
chr24:3541494-3541625
Coord A exon
chr24:3538109-3538235
Coord C2 exon
chr24:3536615-3536719
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTCACTCTCTCTGTTGTAGATG
3' ss Score
10.81
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
CCCAGGAGCCCGAGTTCCACCGCACCTGTGACCAGTTCAGCTTCCAGTGCGCAAACGGGGTGTGCATCAGCCTGGTGTGGAAGTGTGATGGCATGGATGACTGCGGTGATTACTCAGATGAAGCCAGCTGTG
Seq A exon
ATGACACCATTGTGTACAAGGTACAGAACCTGCAGTGGACGGCCGACTTCTCTGGTGCCATCACCCTGACATGGGCTCGGCCAAAGAGGATGTCCTCAACCTCCTGTGTCTACAATGTGTATTACAG
Seq C2 exon
GTGGAATACAGCGGCAGTGGCTCCAAGGAGTGGTCGTCCCTTAGGACCACCAAGAACTACACTGAGATCAAGAACTTACAGGTCAACACACTGTACACAGTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598_MULTIEX3-5/7=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=82.2)
A:
PF0004116=fn3=PU(48.1=86.0)
C2:
PF0004116=fn3=FE(40.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGCCCGAGTTCCA
R:
TGTGTACAGTGTGTTGACCTGT
Band lengths:
230-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]