MmuEX6065160 @ mm10
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:41991312-41992435:-
Coord C1 exon
chr9:41992304-41992435
Coord A exon
chr9:41991619-41991745
Coord C2 exon
chr9:41991312-41991481
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCTGTGTCTCTGTAGATG
3' ss Score
12.3
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCACTCACAGCACCTTGACCTGTACGAGCAGGGAGTTCAAGTGTGAGGACGGCGAGGCATGCATCGTGCTCTCGGAGCGCTGTGATGGCTTCCTGGATTGCTCTGATGAGAGCGATGAGAAGGCCTGCAGCG
Seq A exon
ATGAGTTAACTGTATACAAAGTGCAGAATCTCCAGTGGACAGCTGATTTCTCCGGAGATGTGACTTTGACCTGGATGCGGCCAAAGAAAATGCCATCTGCTTCTTGTGTATACAATGTCTACTACAG
Seq C2 exon
GGTGGTTGGAGAGAGCATATGGAAGACCCTGGAAACCCACAGCAATAAAACAAGCACTGTGCTCAAGGTCCTGAAGCCAGACACCACGTACCAGGTTAAGGTCCAGGTGCACTGCCTCAACAAGGTGCACAACACCAATGACTTTGTGACCCTCAGGACTCCAGAAGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'68-62,'68-60,69-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=84.4)
A:
PF0004116=fn3=PU(46.8=86.0)
C2:
PF0004116=fn3=PD(51.9=70.7)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACAGCACCTTGACCTG
R:
AGTGCACCTGGACCTTAACCT
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types