BtaEX6058781 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32693564-32701645:+
Coord C1 exon
chr15:32693564-32693737
Coord A exon
chr15:32697296-32697409
Coord C2 exon
chr15:32701523-32701645
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCTCCATGGCCAGAGA
3' ss Score
6.46
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAGCAATGCCTGTGCGTCCCGGCCTTGCAGCCTGCTGTGCCTGCCCAAGGCCGACGGCAGCAGGAGCTGCAGGTGTCCAGACGGTGTGTCCAGCAGTGTCCTCCCGTCCGGAGACCTGATGTGCGAGTGCCCTCCTGGCTACCAGCAGAAGAACCACAAGTGTGTCAAAGAAG
Seq A exon
AGAACACCTGTCTCCGCAACCAGTATCGGTGCAGCAACGGGAAGTGTATCAACAGCATCTGGTGGTGTGATTTTGACAATGACTGCGGAGACATGAGCGACGAGAGAAACTGCC
Seq C2 exon
CAACCACCGTCTGTGATCTGGACACCCAGTTCCGCTGCCATGAGTCTGGGACCTGTATCCCCCTCTCCTACAAGTGTGACCTTGAGGATGACTGTGGCGACAATAGCGATGAAAGTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'50-33,'50-32,51-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=94.9)
C2:
PF0005713=Ldl_recept_a=WD(100=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAATGCCTGTGCGTCC
R:
CACACTTGTAGGAGAGGGGGA
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]