MmuEX6065151 @ mm10
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:42018116-42024469:-
Coord C1 exon
chr9:42024296-42024469
Coord A exon
chr9:42022336-42022449
Coord C2 exon
chr9:42018116-42018238
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTCCCCTACTTTAGAGA
3' ss Score
8.68
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAGCAACGCTTGTGTCCCTCAGCCCTGCAGTCTACTGTGCCTCCCTAAGGCCAACAACAGCAAAAGCTGCAGGTGTCCAGAAGGTGTGGCCAGCAGTGTCCTCCCCTCTGGGGACCTGATGTGTGACTGCCCTCAGGGCTATCAAAGGAAGAACAACACCTGTGTCAAAGAAG
Seq A exon
AGAACACCTGTCTCCGAAACCAGTATCGCTGCAGCAACGGCAACTGTATCAACAGCATTTGGTGGTGTGATTTCGACAATGACTGTGGAGACATGAGTGACGAGAGAAATTGCC
Seq C2 exon
CCACGACGGTCTGTGATGCAGACACTCAGTTCCGGTGCCAGGAGTCGGGGACTTGCATTCCACTCTCCTATAAGTGTGACCTTGAAGATGACTGTGGAGATAACAGTGATGAGAGTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'50-40,'50-38,52-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=94.9)
C2:
PF0005713=Ldl_recept_a=WD(100=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTACTGTGCCTCCCTA
R:
CCACAGTCATCTTCAAGGTCACA
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types