DreEX6076186 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21634477-21635633:-
Coord C1 exon
chr15:21635460-21635633
Coord A exon
chr15:21635243-21635356
Coord C2 exon
chr15:21634477-21634599
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTTCCCTTGTTTCAGAGC
3' ss Score
10.69
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCAGAATGCCTGCGCAGATCAGCCATGCAGTCTTCTGTGCCTTCCCCAGCCTGGAAACCAGCGTCACTGTGTTTGTCCCGATGGGGTTCCCACCAGCGTCCTGCCCTCAGGAGAGCGTCAGTGCCAGTGTCCCAGCGGATACCAACTACACAACAATACATGTGTCAAGACAG
Seq A exon
AGCACACATGTTTGCCAAACCAGCACCGCTGCGCTAACGGGAAGTGCATTAGCAGCATCTGGAAGTGCGACAGTGACAATGACTGCGGCGACATGAGTGATGAGCAAGAGTGCC
Seq C2 exon
CCACCACTTCCTGTGACCCTTCAGTGCAGTTCCGTTGTGTAGCTTCAGGTTCCTGTATTCCTCTGGCCTTCAAGTGTGACCATGAGGACGACTGTGGGGATAACAGTGACGAGGAGCATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=94.9)
C2:
PF0005713=Ldl_recept_a=WD(100=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCAGCCATGCAGTCTT
R:
ACAGTCGTCCTCATGGTCACA
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]