GgaEX6025618 @ galGal4
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr24:3502088-3503066:-
Coord C1 exon
chr24:3502893-3503066
Coord A exon
chr24:3502618-3502731
Coord C2 exon
chr24:3502088-3502210
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCCCTCTGCACCAGAAA
3' ss Score
6.89
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GACAGAATGCCTGCATTGCCCACCCCTGCAGCCTGCTCTGTTTGCCCAAGTCCAACAATGGCCGGAGCTGCAAGTGCCCTGAGGGCGTTTCCAGCACCGTGCTGCCTTCAGGGGAGGTGAAGTGTGACTGTCCTCATGGCTACAGCATGAAGAACAACACCTGTGTGAAGGAAG
Seq A exon
AAAACACGTGTCTGCCCAACCAGTACAGATGCTTCAATGGGAACTGCATCAACAGCATTTGGCAGTGTGACAACAACAATGACTGCGGGGACATGAGCGATGAGAAGAACTGCC
Seq C2 exon
CCACCACCGTGTGTGATGCTGAAACCCAGTTCCGCTGCCGGGAATCGGGGACCTGCATCCCTCTGTCCTACAAGTGTGACCTGGAGGACGACTGCGGTGATAACAGCGATGAGAGTCACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598-'23-30,'23-29,24-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=94.9)
C2:
PF0005713=Ldl_recept_a=WD(100=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTTTGCCCAAGTCCAA
R:
CTGTTATCACCGCAGTCGTCC
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]