BtaEX6058788 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32674612-32680357:+
Coord C1 exon
chr15:32674612-32674740
Coord A exon
chr15:32675556-32675641
Coord C2 exon
chr15:32680185-32680357
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGGGGGGGGGTGGTGACAGATA
3' ss Score
-1.33
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGACTTCGGCTTCAAGATGAGTGAAGATTTGTCACTGGAGGTTTGTGTTCCGGATCCGGAGTTTTCTGGGAATTCATTCGCCCCTCCCGTGCCTTGTCCTGTGGGTTCTACTTACAGGAGAACCAGAGG
Seq A exon
ATATCGGAAGATTTCTGGGGACACCTGCAGTGGGGGAGATGTCGAAATGCGCCTGGAAGGAGAGCTGGTGCCGTGCCCCTTGGCAG
Seq C2 exon
AGGAGAACGAGTTCATCTTGTACGCTATGCGCAAGTCCATCCATCGCTATGACCTGGCCTCGGGGGCCACCGAGCAGCTGCCCCTCACCGGGCTGCGGTCAGCGGTGGCCCTGGACTTCGACTATGACCGCAACTGCTTGTACTGGTCCGACCTGGCCTTGGACGTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'43-25,'43-24,44-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTGTCCTGTGGGTTCTA
R:
GCAGTTGCGGTCATAGTCGAA
Band lengths:
177-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]