DreEX6076179 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21642278-21647425:-
Coord C1 exon
chr15:21647297-21647425
Coord A exon
chr15:21644249-21644334
Coord C2 exon
chr15:21642278-21642450
Length
86 bp
Sequences
Splice sites
3' ss Seq
CGTTTGCTCTGGTTTTTTAGGTA
3' ss Score
10.22
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
TGACTATGGGTTTAAGCTGAGCGAGGATCTGTCTCTCGAGGTGTGTGTGCCTGATCCTGAGTTTTCTGGAAACCTCTACGCCCCGCCAGTGCCATGTCCGGTGGGCACCACTTATCACCGCAGCAAAGG
Seq A exon
GTACAGGAAGGTGTCTGGTGACAGCTGCACTGGTGGAGATGTTGAAGCTCGGCTGGACGGAGAAAACCTGCCCTGTCCAGTGGGAG
Seq C2 exon
AGAGTAATGAGTTTATCCTGTATGCTGTGAGGAACTCCATCCACCGCTATGACCTGGCCTCTGGCACAGACCAGCAGCTGCCTCTCACGGGTCTTCACGAGGCTGTGGCACTGGACTTTGATTATGAGAAGAACTGCCTGTACTGGGCGGATATTTCGCTGGACACCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005812=Ldl_recept_b=PU(31.0=22.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGAGCGAGGATCTGTCT
R:
AGGTCATAGCGGTGGATGGAG
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]