GgaEX0009385 @ galGal4
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr24:3505823-3507486:-
Coord C1 exon
chr24:3507358-3507486
Coord A exon
chr24:3507054-3507139
Coord C2 exon
chr24:3505823-3505995
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTGAACTCTGTGTGTTGCAGCTA
3' ss Score
8.58
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGATTTCGGCTTTAAGCTGAGCGAGGATCTGTCGCTGGAAGTTTGTGTCCCAGACCCCGAGTTTGCAGGGAAGCCCTACGACCCACCGGTGCCGTGCCCTGTGGGCTCAACCTACAGGAGGACCCGAGG
Seq A exon
CTACCGGAAGATCTCTGGGGACACCTGCATGGGTGGTGACATCGAGTCACGGCTGGAGGGGGAGATGCTGCCATGCCCACTGGCTG
Seq C2 exon
AGGAGAACGAGTTCATCCTGTACGCCACCCGCTACTCCATCCACCGCTACGACCTCGCCTCGGGGCTCAGCCAGGAGCTGCCGCTGGCCGGGCTGCGCGGGGCAGTCGCGCTCGACTTTGACTATGAGCACAACTGCCTCTACTGGGCTGACGTCACGCTGGACATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTAAGCTGAGCGAGGAT
R:
TCGTAGCGGTGGATGGAGTAG
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]