MmuEX6065144 @ mm9
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:41845132-41849775:-
Coord C1 exon
chr9:41849647-41849775
Coord A exon
chr9:41849076-41849161
Coord C2 exon
chr9:41845132-41845304
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTGGGGGGTTAACAGCTA
3' ss Score
1.29
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGACTTTGGCTTCAAGATGAGCGAAGATCTCTCCTTAGAGGTTTGTGTTCCAGACCCTGAGTTTTCTGGGAAGCCCTACAGCCCTCCTGTGCCTTGTCCTGTGGGTTCTTCATACAGGAGAACGAGAGG
Seq A exon
CTATCGGAAGATTTCTGGGGATACGTGCAGTGGAGGAGACGTTGAAGCGCGGCTGGAAGGGGAGCTGGTCCCCTGTCCCCTTGCAG
Seq C2 exon
AAGAGAATGAGTTCATCCTATACGCCATGCGCAAGTCCATCTACCGCTACGACTTGGCCTCGGGAGCCACAGAGCAGCTTCCTCTCTCGGGGCTGCGGGCGGCTGTGGCCCTGGACTTTGACTATGAACGCAACTGCTTGTATTGGTCTGACCTGGCGCTGGACACCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'20-16,'20-15,21-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGTGTTCCAGACCCTGA
R:
AGAGAGGAAGCTGCTCTGTGG
Band lengths:
177-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: