BtaEX6058789 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32671307-32675641:+
Coord C1 exon
chr15:32671307-32671493
Coord A exon
chr15:32674612-32674740
Coord C2 exon
chr15:32675556-32675641
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGATTGTCTTTTCAGTGA
3' ss Score
7.3
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGGTCCCCTGCACAGAAAACGACTACAAGCTGTGGTCCCCATCCGATGAGCGGGGCAACGAGTGTCTGCTGGGGCACAAGACTGTCTTCAAGCGGAGGACCCCCCACGCCACGTGCTTTAACGGAGAAGACTTCGACCGGCCGGTGGTTGTGTCCAACTGCTCCTGCACCCGAGAGGACTATGAATG
Seq A exon
TGACTTCGGCTTCAAGATGAGTGAAGATTTGTCACTGGAGGTTTGTGTTCCGGATCCGGAGTTTTCTGGGAATTCATTCGCCCCTCCCGTGCCTTGTCCTGTGGGTTCTACTTACAGGAGAACCAGAGG
Seq C2 exon
ATATCGGAAGATTTCTGGGGACACCTGCAGTGGGGGAGATGTCGAAATGCGCCTGGAAGGAGAGCTGGTGCCGTGCCCCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'40-24,'40-23,43-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGCACAGAAAACGACTA
R:
CTCTCCTTCCAGGCGCATTTC
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]