GgaEX0009384 @ galGal3
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
NA
Coordinates
chr24:3550178-3551659:-
Coord C1 exon
chr24:3551473-3551659
Coord A exon
chr24:3550482-3550610
Coord C2 exon
chr24:3550178-3550263
Length
129 bp
Sequences
Splice sites
3' ss Seq
GGTCATGTCTCTCCTTGCAGTGA
3' ss Score
8.53
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGGTCCCGTGCACAGAGAATGACTACAAGCTGTGGTCGCCCTCAGATGAGCGAGGCAATGAGTGCTTACTGGGGCATAAAACTGTTTTCAAAAGGAGGACTCCTCATGCAACATGTTTCAATGGGGAAGATTTTGACAGGCCTGTCATGGTCTCCAACTGCTCTTGTACCAGGGAAGACTTTGAATG
Seq A exon
TGATTTCGGCTTTAAGCTGAGCGAGGATCTGTCGCTGGAAGTTTGTGTCCCAGACCCCGAGTTTGCAGGGAAGCCCTACGACCCACCGGTGCCGTGCCCTGTGGGCTCAACCTACAGGAGGACCCGAGG
Seq C2 exon
CTACCGGAAGATCTCTGGGGACACCTGCATGGGTGGTGACATCGAGTCACGGCTGGAGGGGGAGATGCTGCCATGCCCACTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGTGCACAGAGAATGAC
R:
CTCCAGCCGTGACTCGATGTC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]