HsaEX0061023 @ hg38
Exon Skipping
Gene
ENSG00000137642 | SORL1
Description
sortilin related receptor 1 [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr11:121547792-121550670:+
Coord C1 exon
chr11:121547792-121547892
Coord A exon
chr11:121549960-121549999
Coord C2 exon
chr11:121550585-121550670
Length
40 bp
Sequences
Splice sites
3' ss Seq
AAGCCCAATTGCCTTTTTAGTGA
3' ss Score
3.91
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
TGGCATTGGACTATGGCACTGAGAAGGAAAATGGTCCCAAGATGGACGTCAGGAAATGAGATGAGAATGAGCAAGCTTATAGTATCTTTCCATTAGTTCAG
Seq A exon
TGACTTCGGTTTCAAGATGAGTGAAGATTTGTCATTAGAG
Seq C2 exon
CTACCGGAAGATTTCTGGGGACACTTGTAGCGGAGGAGATGTTGAAGCGCGACTGGAAGGAGAGCTGGTCCCCTGTCCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137642-'46-46,'46-45,47-46
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTGGACTATGGCACTGA
R:
TCTCCTCCGCTACAAGTGTCC
Band lengths:
139-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development