DreEX6076178 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21644249-21647705:-
Coord C1 exon
chr15:21647519-21647705
Coord A exon
chr15:21647297-21647425
Coord C2 exon
chr15:21644249-21644334
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTGTCTGACTCCAGTGA
3' ss Score
6.47
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GCGTGCCGTGCTCAGAGGGCGACTATAAACTGTGGTCTCCCTCGGACGAGAGGGGCAATGGCTGTCTGCTCGGCAGGGAAATGGTGTACAAGCGCCGCTCTCCTCACGCCACCTGCTTTAATGGCGAGGACTTTGACAGGCCCATCTCTCTGTCCAACTGCTCCTGCACACGTCAGGATTATGAATG
Seq A exon
TGACTATGGGTTTAAGCTGAGCGAGGATCTGTCTCTCGAGGTGTGTGTGCCTGATCCTGAGTTTTCTGGAAACCTCTACGCCCCGCCAGTGCCATGTCCGGTGGGCACCACTTATCACCGCAGCAAAGG
Seq C2 exon
GTACAGGAAGGTGTCTGGTGACAGCTGCACTGGTGGAGATGTTGAAGCTCGGCTGGACGGAGAAAACCTGCCCTGTCCAGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACTGTGGTCTCCCTCGGA
R:
CTGGACAGGGCAGGTTTTCTC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]