BtaEX6058914 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35429332-35434122:-
Coord C1 exon
chr15:35434033-35434122
Coord A exon
chr15:35432017-35432200
Coord C2 exon
chr15:35429332-35429552
Length
184 bp
Sequences
Splice sites
3' ss Seq
AACACCCGCCTCCTTGCAAGGTG
3' ss Score
5
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GGGCACCTGAACTGGCCCCCGTTCTGTCTGGTGATGCTGACTGTGACTCACAAGACCCACGAGGTCACTATTGACCGCTTCAACCGCAAG
Seq A exon
GTGTCTGTGGACTCTCAGCCTGCGTGGCCCCCTGTGAGCTGGCACGGGTTCAGAATTGAGGATACAGGCCACATGTACGTGATCCGGACGCCGTCACACATCCAGATCCAGTGGCTCCACAGCTCGGGACTCATGATCCTGGAGGCCAGCAGAGCCAGCGAGGCCCAGGGCCGTGGCCTGTGTG
Seq C2 exon
GTATCTGTGATGGAGATGTGGCCAATGACCTCACCCTGAAGGATGGTTCTGTGGTGAGTGAGGCCGAAGACCCGGCTCCCTTTCTGGACAGCTGGCAGGTGCCCAGCTCTCTGACCTCAGTTGGCCAGACCCGCTTCCGTCCAGACAGCTGTGCCACGGCCGACTGCTCGCCCTGCCTTCGCATGGTGTCCAACCGCACGTTCAGTGCCTGCCACCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'44-43,'44-42,45-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(18.7=100)
A:
PF0009420=VWD=FE(39.4=100)
C2:
PF0009420=VWD=PD(10.3=21.6),PF087426=C8=PU(31.4=29.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACTCACAAGACCCACG
R:
GGTTGGACACCATGCGAAGG
Band lengths:
245-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]