HsaEX6001069 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17635159-17653469:+
Coord C1 exon
chr11:17635159-17635248
Coord A exon
chr11:17650680-17650863
Coord C2 exon
chr11:17653249-17653469
Length
184 bp
Sequences
Splice sites
3' ss Seq
ACACTGAATTCCCTCCCAAGGTG
3' ss Score
7.42
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGGCACCTGAACTGGCCCCCGTTCTGTCTGGTGATGTTGAACATGACTCACTTGGCCCATCAGGTCACTATTGATCGCTTCAACCGAAAG
Seq A exon
GTGACTGTGGACTTGCAGCCTGTGTGGCCACCGGTGAGCAGGTATGGATTCAGAATTGAGGACACAGGCCACATGTACATGATCCTGACTCCCTCAGACATCCAGATCCAGTGGCTCCACAGCTCAGGACTCATGATCGTGGAGGCCAGCAAAACCAGCAAGGCCCAGGGCCATGGCCTGTGCG
Seq C2 exon
GTATCTGTGATGGAGATGCAGCCAATGACCTTACCCTGAAGGATGGCTCAGTGGTGGGTGGGGCTGAGGACCCTGCTCCCTTTCTGGACAGCTGGCAGGTGCCCAGCTCCCTGACCTCAGTGGGCCAGACCCGCTTCCGCCCAGACAGCTGCGCCACAACTGACTGCTCGCCCTGCCTTCGCATGGTGTCCAACCGCACCTTCAGTGCCTGCCACCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'41-46,'41-45,42-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(18.7=100)
A:
PF0009420=VWD=FE(39.4=100)
C2:
PF0009420=VWD=PD(10.3=21.6),PF087426=C8=PU(31.4=29.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATGACTCACTTGGCCCA
R:
CTGAAGGTGCGGTTGGACAC
Band lengths:
257-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)