DreEX6006536 @ danRer10
Exon Skipping
Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39207687-39208403:-
Coord C1 exon
chr7:39208314-39208403
Coord A exon
chr7:39208019-39208205
Coord C2 exon
chr7:39207687-39207907
Length
187 bp
Sequences
Splice sites
3' ss Seq
TCACTGTGTTGTTTTTTCAGCTG
3' ss Score
10.67
5' ss Seq
GTGGTATGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
CTTGTGTGGAACTTTACTAATTTGTGTCTGGCAGCTTTAAACATCACTCACAAATCTAACGAAGTTCTTGTGAATCGTCTTCAGAGACGT
Seq A exon
CTGTATGTGAACTCTAGGTATGCAAAGCCACGTTTTAAGAAGTATGGTTTTGAGATTCTGGACACAGGAAACATGTACCTTATACGGAGTCCAGCTGGTTTGAAGATCCAGTGGTTCCACACTACAGGCATGATGGTGATTGAGATGGACAGCTATAACAATAGACTGCCCACGATGGGATTGTGTG
Seq C2 exon
GTAGTTGTGATGGTAATCCATTAAATGATCTGACTCTGTCTAACGGTACAGTTGTGCCTGAGCAAGAGGATCCAGCCGTATTCATCGATAGCTGGCAGATTCCCAACACCACCAGCTACGTCAGCAACAGCAGGCGGCGAGAAGTCAACTGCACCACCAGTGACTGCTCTCAGTGCTTTAACATGCTGAACAACAACACCTTCACCCTCTGCCATGCTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(18.5=100)
A:
PF0009420=VWD=FE(39.5=100)
C2:
PF0009420=VWD=PD(10.2=21.6),PF087426=C8=PU(31.4=29.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGTCTGGCAGCTTTAAACA
R:
CTGAGAGCAGTCACTGGTGGT
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]