MmuEX6010882 @ mm10
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:46295375-46298351:+
Coord C1 exon
chr7:46295375-46295454
Coord A exon
chr7:46295843-46296026
Coord C2 exon
chr7:46298131-46298351
Length
184 bp
Sequences
Splice sites
3' ss Seq
TCAATTTCTTACCCCTTAAGGTG
3' ss Score
7.32
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCATTCTTCCTTGATGGTCAGCAGGAAGTGGGCTGATGCCAGGGAGGGAGCCCCTCAACCTAAGGCTGTAGAGCCAGGAA
Seq A exon
GTGACTGTGGACTCTCAAGTTGTGTGGCCACCCATGAGCCGATATGGCTTCCGAATTGAGGATACAGGACACATGTATATCGTCCGGACACCCTCACACATCCAGATCCAGTGGCTTCACAGCTCAGGACTCATGATCTTGGAAGCCAGCAAAGTCAGCAAGACCCAGGGCCATGGCCTGTGTG
Seq C2 exon
GTATCTGTGATGGAGATGCAGCCAATGACCTCACCTTGAAGGATGGCTCTGTGCTGGGTGAGGCAGAGGACCCTGCTCCCTTTCTGGACAGCTGGCAGGTGCCCAGCTCCCTGACTTCAGAGGGTCAGACCCGCTTCCGCCCAGACAGTTGTGCCACAGCTGACTGCTCGCCCTGCCTTCGCATGGTGTCCAACCGAACCTTCAGTGCCTGCCACAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'32-50,'32-39,43-50=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009420=VWD=PU(74.6=98.0)
C2:
PF0009420=VWD=PD(10.3=21.6),PF087426=C8=PU(31.4=29.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTTGATGGTCAGCAGGA
R:
CAGTCAGCTGTGGCACAACTG
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types