BtaEX6059418 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45614814-45616583:+
Coord C1 exon
chr15:45614814-45614904
Coord A exon
chr15:45615558-45615682
Coord C2 exon
chr15:45616443-45616583
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCAATGTGTCTACCTGCAGACA
3' ss Score
9.33
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCACGTGCAGTGAGCAGGACCGCGTGGTCAGAGCATTGGAGGGGGACCTGCACTTCCCAGAAAGTCCCTTCCTATATTATGAGAGCAAGCA
Seq A exon
ACAGTGTGCCTGGACCCTGTTGGTACCAGAGGAAATGCATGTGCTCCTCAGTTTTTCCCACTTTGATGCAGAGTCTTGTGACCATAATTACCTGTCAATATATTCTTTAGAAGACACACTTATTG
Seq C2 exon
CGAAATTCTGTGGAGAGAGACTGGCTTCATCAGTTCTTGTTGGCTCCAACGCTATAAGGCTGAGCTTCATCTCTGATAACACAGATAATGCCGTTGGGTTCAATCTCACCTATAAAGCTGTTAAACCAAACTACCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(25.9=90.3)
A:
PF0043115=CUB=FE(38.9=100)
C2:
PF0043115=CUB=PD(34.3=77.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGCAGGACCGCGTG
R:
AGGAAGGTAGTTTGGTTTAACAGCT
Band lengths:
223-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]