MmuEX6012989 @ mm9
Exon Skipping
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:114932604-114933927:-
Coord C1 exon
chr7:114933837-114933927
Coord A exon
chr7:114933593-114933717
Coord C2 exon
chr7:114932604-114932744
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTCATGTATCTGCCTACAGACT
3' ss Score
8.36
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTTTATGCAGTGAGCCTGATGGTCTCATCAGTGGGTCTGAGGGAGAGCTGCACTTCCCAGAAAGCCTCCACCTGTACTATGAGAGCAAGCA
Seq A exon
ACTGTGTGTCTGGACCTTCCTGGTTCCAGAGGACATGCATATGTTGCTCAATTTGTCACACTTGGATATAGAGTCTTGTCACCACAATTACCTGGCAATGTACTCTTTAGAAGACAGACTCGTTG
Seq C2 exon
GGAAATTCTGTGGAGAAAATCTCCCTTCATCCATTCTCATTGGCTCCAGTTCCATCCGGCTGAGGTTCATCTCTGATGCCACAGATTATGCCACTGGGTTTAATCTCACCTATAAAGCACTTAAGCCGAGATACCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(25.9=90.3)
A:
PF0043115=CUB=FE(38.9=100)
C2:
PF0043115=CUB=PD(34.3=77.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGTGAGCCTGATGGTCT
R:
GGATGGTATCTCGGCTTAAGTGC
Band lengths:
226-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: