HsaEX6000661 @ hg19
Exon Skipping
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:29970]
Coordinates
chr11:7717216-7718346:-
Coord C1 exon
chr11:7718256-7718346
Coord A exon
chr11:7718012-7718136
Coord C2 exon
chr11:7717216-7717257
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTCCATGATCTGCCTACAGACG
3' ss Score
7.34
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCTGGTGCAGTGAGCAGGATGTCATAGTCAGCGGGGCTGAGGGGAAGCTGCACTTCCCAGAAAGCCTCCACCTATATTATGAGAGCAAGCA
Seq A exon
ACGGTGTGTCTGGACCCTGCTGGTACCAGAGGAAATGCATGTGTTGCTCAGTTTTTCCCACCTAGATGTTGAGTCTTGTCACCACAGTTACCTGTCAATGTATTCTTTAGAAGACAGACCCATTG
Seq C2 exon
GAAAATTTTGTGGAGAAAGCCTCCCTTCATCCATTCTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-'8-9,'8-8,9-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(25.9=90.3)
A:
PF0043115=CUB=FE(38.9=100)
C2:
PF0043115=CUB=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGAGCAGGATGTCATAGT
R:
AGAATGGATGAAGGGAGGCTT
Band lengths:
122-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)