GgaEX1041588 @ galGal3
Exon Skipping
Gene
ENSGALG00000005318 | F1NZZ9_CHICK
Description
NA
Coordinates
chr5:8360112-8360982:-
Coord C1 exon
chr5:8360892-8360982
Coord A exon
chr5:8360660-8360793
Coord C2 exon
chr5:8360112-8360252
Length
134 bp
Sequences
Splice sites
3' ss Seq
GAGAGAATTTATCATTACAGATT
3' ss Score
3.25
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CATTTTGTAGTGTTCAGGATGGCAAACTCACAGACAGTGAAGGAGAATTAAATTTTCCTGGAGGTTCCGAACAGTTCTATCAAAACCATCA
Seq A exon
ATTGTGCATATGGACTCTGTTTGTACCAGAAGGGAATTATATATTGCTTCATTTTTCCCACTTTGATATAGAGCCAGAAACATTTTGTGACTATGATTCTTTATCAGTCTATTCAAAAGACAACAGACTTGTTG
Seq C2 exon
GGAAATTCTGTGGAGGAGATCTTCCATTACCTATTTTGATTGGGTCCAATAATATAAGGCTGAAATTTGTTTCTGACAACAAGGATTATGGAACTGGTTTTTCTATGACTTATAAAGCTCTTACAACAGGTATTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(25.2=90.3)
A:
PF0043115=CUB=FE(40.5=100)
C2:
PF0043115=CUB=PD(33.3=77.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGTGTTCAGGATGGCAAACT
R:
CAGGAAGAATACCTGTTGTAAGAGCT
Band lengths:
227-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]