BtaEX6060061 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57401162-57403014:+
Coord C1 exon
chr15:57401162-57401352
Coord A exon
chr15:57402049-57402173
Coord C2 exon
chr15:57402857-57403014
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTCTTGGTCTCTAGGCC
3' ss Score
10.05
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
CGGGCGAGGAGTCCGGCTTCCTCAGCTTCGCCAAGGGGGACCTCCTCATCCTGGACCACGACACGGGCGAACAGGTGATGAACTCGGGCTGGGCCAGCGGCATCAACGAGAGGACCAAGCAGCGTGGGGACTTCCCCACTGACTGCGTTTATGTCATGCCTACTGTCACTATGCCACCGAGGGAGATTGTG
Seq A exon
GCCCTGGTCACCATGACCCCCGACCAGAGGCAGGATGTTATCCGACTCCTGCAGCTGCGAACGGCAGAGCCCGAGGCGCGCACCAAGCCCTACACACTGGAGGAGTTTTCCTACGACTACTTCAG
Seq C2 exon
GCCCCCACCCAAGCACACACTGAGCCGCGTCATGGTGTCCAAGGCCCGCGGCAAGGACCGGCTGTGGAGCCACACGCGGGAGCCGCTCAAGCAGGCCCTGCTCAAGAAGATCCTGGGCAGCGAGGAGCTCTCACAGGAGGCCTGCATGGCCTTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'38-43,'38-42,39-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.262 C2=0.056
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(84.7=78.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACAGGTGATGAACTCGGG
R:
GCCCAGGATCTTCTTGAGCAG
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]