DreEX0048767 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3163348-3166763:+
Coord C1 exon
chr18:3163348-3163538
Coord A exon
chr18:3164048-3164175
Coord C2 exon
chr18:3166587-3166763
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTCTGACTGCATGGTTTAGGCT
3' ss Score
5.05
5' ss Seq
CCGGTCAGC
5' ss Score
4.61
Exon sequences
Seq C1 exon
CTGCTGATGACTCCACATTCCTGAGTTTCCTAAAGGGGGATCTGATCGTTCTGGACCAGGACACCGGTGAGCAGGTCATGACGTCCGGCTGGGCTCACGGCACCAACGACAGGACAAAACAGAGAGGAGACTTTCCCGCGGACTGCGTTTACGTGCTGCCCACCGTGGTCAGACCACCGCACGATGTCGTG
Seq A exon
GCTTTTGTCACGATGACCCCAGATCAGCGTCAGGAGTCGCTCCGCATCTCACACGTCCCAGCACTGACTGAGACGGAGGAGAGGGTAAAGCCCTACACGCTGGAGGAGTTCTCCTACGACTACTTCCG
Seq C2 exon
GCCTCCTCCTAAACACACTCTGAGTCGAGTGATGATCACCAAGAACCGAGGGAAGGATAAACTGTGGTGCTGCACTCGAGAGCCCATCAAACAGGCGCTGCTGAAGAAGTGTGGGGGACACGAGGAGCTCTCACAGGAGGCTTGCATGGCTTTCATCGATATCCTTTCTGCACAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'39-37,'39-36,40-37
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.221 C2=0.051
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(84.7=78.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGATCTGATCGTTCTGGA
R:
CCTGTTTGATGGGCTCTCGAG
Band lengths:
252-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]