MmuEX6012410 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98063588-98064924:-
Coord C1 exon
chr7:98064734-98064924
Coord A exon
chr7:98064113-98064237
Coord C2 exon
chr7:98063588-98063745
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTCTTGCCACCCAGGCC
3' ss Score
7.27
5' ss Seq
CAGGTGACG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTGGTGAGGAGTCAGGCTTCCTCAGCTTCGCCAAGGGAGACCTCATCATCCTTGACCATGATACTGGTGAGCAGGTCATGAACTCAGGCTGGGCCAACGGCATCAACGAGAGGACCAAGCAGCGCGGCGACTTCCCCACTGACTGTGTATACGTCATGCCCACTGTCACCTTGCCACCAAGGGAGATTGTG
Seq A exon
GCCCTGGTCACTATGACCCCAGACCAGAGGCAGGATGTCGTCCGGCTCCTGCAGCTTCGCACAGCAGAGCCAGAGGTGCGCGCCAAGCCCTACACGCTAGAGGAGTTCTCCTACGACTACTTCAG
Seq C2 exon
GCCCCCACCCAAGCACACGCTGAGCCGTGTCATGGTGTCCAAGGCCCGCGGTAAGGACAGGCTGTGGAGCCACACACGAGAGCCCCTCAAGCAGGCCCTGCTCAAGAAGATCCTGGGCAGTGAAGAACTCTCCCAGGAAGCCTGCATGGCCTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'71-66,'71-65,73-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.061 C2=0.037
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(84.7=78.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGTCATGAACTCAGGC
R:
AGAGTTCTTCACTGCCCAGGA
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types